Seurat

Description

Utilize the whole Seurat pipeline developed by the Satija Lab in one easy to use plugin. Yielding tSNE parameters, graph-based clustering, DE gene sets for each cluster, and basic classification - all from one dialog.

Version 4.0 and later allows for multi-modal analysis when there are both RNA and protein measurements available in the data.

---

Algorithm Authors

Andrew Butler

Paul Hoffman

Tim Stuart

Christoph Hafemeister

Shiwei Zheng

Rahul Satija

Plugin Developers

---

Citation

View Citation

Documentation

View Documentation

---

Applications

---

Categories

Clustering

Visualization

Quality Control

Dimensionality Reduction