Plugin Exchange
Innovative plugins and tools to upgrade your analysis in FlowJo™ and SeqGeq™
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flowCut is a tool for separating quality events in FCS data from outlier events to achieve a more uniform distribution of data.
v1.0 published February 12, 2024
A tool to help determine the best voltage for acquisition that will optimize the stain index (SI) of cells stained with a reference reagent for each detector.
v1.0.0 published August 14, 2024
Utilize FCS data captured from Rosetta Calibration beads to calibrate size measurements of small particles.
v1.0.0 published February 24, 2023
Premessa is a tool to edit the parameter and/or stain names of an FCS file if these were incorrectly written from the cytometer.
v1.0.3 published May 16, 2025
The FlowJo Mutual Nearest Neighbors Plugin is a tool to correct batch processing variation in flow cytometry data.
v1.0.0 published November 06, 2023
A tool for converting FlowJo v9 .jo files into FlowJo v10 wsp files.
v0.2 published November 03, 2021
Dropout imputation using a low-rank approximation
v0.1 published May 30, 2019
Merge CSV files into data using SeqGeq, and retain population annotations.
v0.3.1 published February 21, 2020
Impute the dropout values in scRNA-seq data
v1.0 published May 31, 2019
Visualize your high dimensional data in fewer dimensions.
v1.0.0 published April 22, 2022
Dimensionally reduce, cluster and identify areas of difference between two user specified experimental conditions.
v1.2.2 published January 05, 2024
An Algorithm that attempts to mimic the way an expert flow cytometry analyst interprets and adjusts gates in 2-dimensional plots.
v1.2 published August 10, 2023
PHATE (Potential of Heat-diffusion for Affinity-based Trajectory Embedding)
v1.0.0 published September 08, 2021
Robust Integration of Single-Cell Cytometry Datasets
v1.0.2 published June 28, 2023
Fix mismatching parameter names in template workspaces.
v0.3 published November 20, 2020
Support Vector Machine (aka "SVM") automated gating tool for FlowJo.
v0.1 published January 29, 2020
A tool for visually exploring your BD FACSChorus™ imaging data in FlowJo!
v1.3.15 published October 29, 2024
A utility tool for demultiplexing samples from single-cell RNA sequencing experiments.
v1.1 published November 16, 2020
Single-Cell Immune Repertoire Profiling
v4.3 published October 17, 2023
Use a simple rubric for population identification to automate the process of labeling clusters.
v0.1 published November 03, 2020
User-guided automated gating analysis.
v0.5.1 published December 09, 2022
Calibrate samples using a standard curve
v1.0 published May 30, 2019
Correct for batch effects between combined samples directly within SeqGeq
v1.0.10 published June 12, 2023
Deep-Learning Cell Classification
v1.5 published May 30, 2019
v published January 18, 2025
Automatically name subsets according to Astrolabe Diagnostics population annotations in FlowJo.
v0.6 published September 09, 2019
Correlation graphs and statistics.
v0.4.1 published September 11, 2023
v published January 18, 2025
An R based quality control algorithm to remove abnormal events from flow data!
v1.5.0 published August 30, 2023
Measure the quality of clustering in n-dimensional space using two statistical methods - ClustRCheck and Taylor Index.
v0.9 published October 10, 2023
Seurat pipeline developed by the Satija Lab
v5.0.2 published July 01, 2024
Automatically gate categorical parameters.
v2.6.1 published December 03, 2020
v published January 18, 2025
v published January 18, 2025
Cytometric Bead Array kit analysis
v5.2.2 published November 17, 2023
v published January 18, 2025
v published January 18, 2025
Embed FlowSOM maps into 2D space
v2.2.0 published January 05, 2024
v published January 18, 2025
Helps correct for technical variability within FlowJo by normalizing batches of flow data
v1.2.3 published July 02, 2021
Uses K-means clustering to create populations.
v1.0.1 published December 03, 2020
Automated cleaning of flow data.
v2.4 published May 04, 2021
v published January 18, 2025
v published January 18, 2025
v published January 18, 2025
v published January 18, 2025
Delineate clusters by unsupervised nearest-neighbors grouping of biological parameters.
v4.0.5 published November 25, 2024
ClusterExplorer illustrates a profile of relative intensity values across parameters in flow cytometry data.
v1.7.6 published May 17, 2023
Subset your sample in a specified event count
v3.3.1 published July 15, 2021
Find anomalies in Flow Cytometry data
v2.3.1 published November 02, 2021
Cluster using Self-Organizing Maps
v4.0.0 published January 05, 2024
A dimensionality reduction technique similar to t-SNE
v4.0.4 published September 13, 2023
A plugin for importing BD FACSDiva™ Software experiments into FlowJo.
v2.0 published January 08, 2021