Below are the exhaustive release notes and known issues. For a digest of these release notes, please see this page.
New Features:
Cell Cycle:
- New 1d Cell Cycle Platform with both Watson Pragmatic and Dean Jett Fox modeling.
Export:
- Completely revised, Export/Concatenate now has all the features you loved in v9
Kinetics:
- New implementation of Kinetics Platform
Launcher Window:
- New Implementation of Launcher Window
Installer:
- Digital Signature for OSX App Bundle
- Windows Installer installs shortcut for FlowJo
Plug-In Nodes
- R Scripts in FlowJo as ‘nodes’
- R-nodes update when parent moved
- R-nodes create derived parameters
Ribbons:
- Annotate Ribbon for TE
- Annotate Ribbon for LE
- Keywords icon in the TE is missing the text.
- Layout Batch Ribbon Destination Dropdown does not resize properly for selection
- Dropdown button widths in TE & LE should be reevaluated when values change
- Tool Tips for Power Menu
- Make All tabs available by default upon new install and opening. Remove Simple and Intermediate Ribbon Configuration Options
- Button highlighting for large icons in ribbons is broken
- Make the TE output ribbon look more like the LE output ribbon
- Shuffle Icons in the TE Edit band
- Document Band Re-design
Fixes & Improvements:
3D Viewer
- Cmd S should always map to Save workspace
- 3d viewer, remove the save button, keep the cmd/ctl-s functionality.
- Opening 3D Viewer from a saved WSP and ACS
- 3D viewer Exporting confirmation
- group applied 3D Node fixed
Authentication:
- Dispatched engines
- Offline startup improvements
- handling any USB device as not an “”invalid dongle””
- warning about last 4 days of SN expiry
Boolean Gates:
- Creating Combination Gates on 5 or more gates on one sample.
- Performance with combination gating
- Creating NOT gate of AND population
- Boolean gates calculation time
Compensation Matrix Editor:
- NxN Overlay of Compensated and Uncompensated by default
- Matrix Editor NxN plots axes
- CSV importing to Matrix editor
- save compensation matrix remembers last used directory
Compensation:
- Navigating from Comp group to Comp sub group
- Compensation wizard parameters handling
- Canceling add matrix
- Application of another matrix changes badge color
- Compensation UI recognizes “”filter parameters” preference
- Moving “”size”” gate during compensation
Derived Parameters:
- Changing scale of derived parameter
- nth Derived Parameter showing up in workspace until re-open
- Derived parameter handling in saved/re-opened wsp
- Derived parameter drop-down menu
- Derived parameters and kinetics use
Dialogs:
- ‘Favorites’ gate name menu maintaining title
- File Chooser now shows favorites in Mavericks (OSX 10.9)
- Launcher window revised
- Keyword series dialog
- Checkbox to ‘display all keywords’ in Sample Properties dialogue
- Preview performance in KeywordValueSeries
- Arrow keys in fields in Transform Dialog
- Warning Dialog for missing file.
- Sample Inspect Dialog matrix area now visible
Graph Window:
- Make Movie from Graph Window fixed
- Spider Gates location/angle matches child population visualized in Graph Window
- Miltenyi Transform now a full Transform
- Linear axes with events for ranges that are not integers
- Percentile gates and modification
- Time parameter transforms, handling for Summit files
- GW improvements in spacing, CC gate names
- Coulter CYAN 16bit scale improved
- Copy Histogram to excel
- X and Y Axis Labels on graph window
- Graph Window of Raw Samples in Saved Workspace
- Bisector gate optimized
- Renamed Copy Image With Transparency to Copy Image
- GW gate name warning
- Statistics of derived parameter updating on modification
- Spider Quads and transforms
Layout Editor: Graphs
- LE and Grouped Figs
- Multigraph Overlays
- Show gate median appearing in LE
- Newlines in chart annotations preserved when duplicating/batching
- Applying Adjunct Histograms drawing
- NxN/All Parameters by Y multigraphs maintains aspect ratio when created after histogram multigraph
- Changing plot type for multiple LE charts
- Graph Definition Axis Checkbox checked by default
- LE – Send Backward and Bring Forward buttons
- All Params by Y/NxN Mulitigraphs drawing
- Ancestry/Backgating/NxN shows CC model & shading
- LE Chart annotations adhere to ‘Sample Display Naming’ prefs
Layout Editor: Iteration
- LE Batch to file with Stat Table
- Panel iteration with kinetics
Layout Editor: Outputs
- Replacing existing name on outputs
- Graph labels and Numbers and handling large fonts
- Staggered overlay output
- Batch to Powerpoint Contour plot
- LE Tiff output
- Batch to Web image filenames
- Edit text in Exported PDF Files (LE)
Layout Editor: Overlays
- Gating issue in overlay graph
- Remove layer command in LE legend now works to remove multiple selections simultaneously
- Unit Area scaling in overlays
- Overlay Legend Column Resizing saving
Movie Creation (Graph Window)
- GW Movie Creation fixed
Plate Editor:
- Set Plate Size dialog
- Apply keywords to group when with multiple plates in workspace
- Pasting Plate Name in Plate Editor menu
Population Comparison:
- Adding control to population comparison
- PC Layout Editor output
- Previous / next sample arrows in platform
- Multi-param chi square statistics
- Add To Group function in Population Comparison.
- Save As function in Population Comparison.
- Progress Indicator
- Pop Comparison Stats in LE
- Set Control Group then Add To Group
- Add To Group then all other selectable options from the File, Edit and View menus.
- Comparison save as image export charts and annotation
- Header with statistics names
Preferences:
- Cell cycle prefs
- License Prefs
- Coulter Kaluza Gallios scale settings issue
- Duplicate Cytometer preferences now resolved
- Compensation Prefs
- Plates Prefs
- LE pref for hiding graph numbers
- GraphsPrefs-Pane Histogram Smooth setting
- Include Parameter Name preference effect on statistic nodes and graph windows
Printing:
- FlowJo icon is now in Header/Footer window. LE and TE
- Reset from Print
- Page Numbers
Reconnect Samples:
- Reconnect workspace
Shortcut Keys:
- shortcut key to increase/decrease gate size in GW
- Shortcut Key for Add Staging Well
- Shortcut Key for Save Well Selection
- Shortcut key for Save As
Statistics:
- CVs in the TE
- Adding a 2nd correlation stat
- Shortcut CV statistic
- Copy Histogram Function
Table Editor:
- Table Keyword iteration
- TE reports restore the Batch Type
- Export to XML and meta data to identify samples
- Export to HTML from the TE
- Table Editor Expected range coloring
- Range value display in table header cells
- Table Editor 3D Plot window’s export
- TE export with keyword value and handling ‘%’
- Preference to remove summary stats in tables
- Select all button not enabled with an empty table
- Clear button not be enabled without a selection to clear
- Boxplot with whiskers
- Show header
- Changing the Header on a sample used for a formula
- Edited Column Headers alignment in a Batched Table.
- TE CC column names
Templates:
- Apply Template to Workspace and transforms & matrices
- ACS workspace name same as filename
Transforms:
- Time Parameter transformation and gate scaling
- Transform with LSRII FCS2 files
- Legacy workspaces and time handling
- Logicle transformation and adjustment
- Hyperlog transformation and adjustment
- Log on Comp Ctrl after compensating
- Manual adjustment of arcsinh transform on CyTOF data
Undo/Redo:
- After Group Apply
- Undo group-apply of CC node in workspace
- Undo overlay in Grid
Workspace:
- Group fields in reloaded WSP, WSPT and ACS.
- Group deletion
- Workspace asking to save when closing
- Group gets locked and unable to change to another group. 60% of the time
- Save as WSPT… now does not leave the user editing the WSPT
- Group highlighting
- FJ asking to save if you try to close an unsaved workspace
- User feedback that workspace is still calculating
- Cmd – W (Alt -W) closes the frontmost window
- Parent sample of current graph always shows an indicator in workspace
- Reconnecting samples to the workspace improvements
- Opening CyTOF files
- Edit group properties right click menu
- Expanding Sample tree with option key
- Remove the Group Analysis pane
- Reorder right click menu in workspace
- Select Equivalent Nodes now enabled when CC node selected
- Do not open TE & LE by default when opening a workspace.
- Re-opening a workspace that is already open
- Keyword drop down menu in Create Series of Values
- Workspace Editing font
- Warning when Group is deleted
- Cmd/Ctl S to save now works the same as pressing the Save button
- Gate coordinates for Ellipse gates
- Group-owned CC model constraints changed coloring
- Numerical Keyword value series
- Text keyword value series
- Spacing in the rows and columns of the WS
- dragging selection of nodes
- Copy/Pasting a statistic from the workspace to the LE
- Group Applied Percentile Gates deletion
- Rename gate from right click menu in Graph window
- OSX – Cmd W to close workspace
- 2 monitors
- Saved WSP appearing in recent file list
- Group-applying ellipse gate with gate coordinates displayed
- Gate Duplicate Feature